Joshua Herbeck
herbeck at u dot washington dot edu
Center for AIDS Research and
Department of Microbiology, University of
Washington, Seattle, WA, NIH Postdoctoral Fellow, 1/04 on.
Marine Biological Laboratory, Woods Hole, MA, Postdoctoral Scientist, 9/02 to
9/03
University of California, Berkeley,
Berkeley, CA, Ph.D. 8/02
Tufts University, Somerville, MA,
B.S. 5/95
My primary scientific interests are in infectious disease biology and population genetics.
Publications
2008. Herbeck, J.T., Gottlieb G.S., Li X., Hu Z., Detels R., Phair J., Rinaldo
C., Jacobson L.P., Margolick J.B., J.I. Mullins. Lack of evidence for changing
virulence of HIV-1 in North America. PLoS ONE, 3(2): e1525. link
2007. Rolland M., Brander C., Nickle D.C., Herbeck J.T., Gottlieb G.S.,
Campbell M.S., Maust B.S., J.I. Mullins. HIV-1 over time: fitness loss or
robustness gain? Nature Reviews Microbiology, 5(9): 1-2. link
2007. Herbeck J.T., Lyagoba, F., Moore, S.W., Shindo, N., Biryahwaho, B.,
Kaleebu, P., and J.I. Mullins. Prevalence and genetic diversity of HIV-1
subtypes A and D in women attending antenatal clinics in Uganda.
AIDS Research and Human Retroviruses, 23(5): 755-760. link
2007. Bhattacharya T., Daniels M., Heckerman D., Foley B., Frahm N., Kadie C.,
Carlson J., Yusim K., McMahon B., Gaschen B., Mallal S., Mullins J.I., Nickle D.C.,
Herbeck J., et al. Founder effects in the assessment of HIV polymorphisms and
HLA allele associations. Science, 315 (5818): 1583-6.
2007. Gottlieb G.S., Hawes S.E., Nickle D.C., Herbeck J.T., Kiviat N.B.,
Mullins J.I., Sow P.S. Presenting plasma HIV RNA level and rate of CD4 T-cell
decline. JAMA, 297: 805.
2006. Herbeck J.T., Nickle, D.C., Learn, G.H., Gottlieb, G.S., Curlin, M.E.,
Heath, L., and J.I. Mullins. HIV-1 env evolves toward ancestral states
upon transmission to a new host. Journal of Virology, 80: 1637-1644.
.pdf
2005. Herbeck J.T. and D.P. Wall. Converging on a General Model of Protein
Evolution. Trends in Biotechnology, 23 (10). .pdf
2004. Herbeck J.T., Degnan, P.H., and J.J. Wernegreen. Non-homogeneous Model
of Sequence Evolution Indicates Independent Origins of Primary Endosymbionts
within the Enterobacteriales (gamma-Proteobacteria). Molecular Biology and
Evolution, 22: 520-532.
.pdf
2003. Herbeck J.T., Funk, D.J., Degnan, P.H., and J.J. Wernegreen. A
Conservative Test of Genetic Drift in the Endosymbiotic Bacterium
Buchnera: Slightly Deleterious Mutations in the Chaperonin groEL.
Genetics, 165: 1651-1660. .pdf
2003. Herbeck J.T., Wall, D.P., and J.J. Wernegreen. Gene Expression Level
Influences Amino Acid Usage, but not Codon Usage, in the Tsetse Fly Endosymbiont
Wigglesworthia. Microbiology,149: 2585-2596.
.pdf
2003. Herbeck J.T. and J. Novembre. Codon Usage Patterns in Cytochrome
Oxidase I Across Multiple Insect Orders. Journal of Molecular Evolution,
56: 691-701.
.pdf
2003. Wall, D.P. and Herbeck J.T. Evolutionary Patterns of Codon Usage in
the Chloroplast Gene rbcL. Journal of Molecular Evolution, 56:
673-688.
.pdf
1996. Bloch Qazi, M.C., Herbeck J.T., and S. Lewis. Mechanisms of Sperm
Transfer and Storage in the Red Flour Beetle (Coleoptera: Tenebrionidae).
Annals of the Entomological Society of America, 89: 892-897.
jth 05/1/08
